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Publications: Video & Image Bioinformatics

Zahedi A, On V, Lin SC, Bays BC, Omaiye E, Bhanu B, Talbot P. (2016) Evaluating Cell Processes, Quality, and Biomarkers in Pluripotent Stem Cells Using Video Bioinformatics. PLoS One. 2016 Feb 5;11(2):e0148642. doi: 10.1371/journal.pone.0148642. eCollection 2016.

Guan B, Bhanu B, Talbot P, Weng N (2015) Extraction of Blebs in Human Embyonic Stem Cell Videos. IEEE/ACM Trans Comput Biol Bioinform.  2015 Sep 18. [Epub ahead of print]

Guan, B., B. Bhanu, P. Talbot, Jo-Hao Weng (2014) Bio-optimized segmentation of blebs in human embryonic stem cell videos.IEEE Transactions on Biomedical and Health Informatics, in press.

Guan, B. X., B. Bhanu, P. Talbot, S. Lin (2014) Bio-driven cell region detection in human embryonic stem cell assay. IEEE/ACMTransactions on Computational Biology and Bioinformatics, 01/2014; 11(3):604-611. DOI:10.1109/TCBB.2014.2306836.

Lin, S., H. Yip, R. Phandthong, B. Davis, and P. Talbot (2014) Evaluation of cell behavior and health using video bioinformatics tools. Video Bioinformatics, Springer, in review.

Weng, J-H., G. Phandthong and P. Talbot (2014) A video bioinformatics method to quantify cell spreading and its application to cells treated with Rho-associated protein kinase and blebbistatin. Video Bioinformatics, Springer, in review.

Talbot, P. N. zur Nieden, S. Lin, I. Martinez, B. Guan and B. Bhanu (2014) Use of video bioinformatics tools in stem cell biology. In: Handbook of Nanotoxicology, Nanomedicine and Stem Cell Use in Toxicology, Eds: S. Sahu and D. Casciano, John Wiley, West Sussex, United Kingdom. Pp 379-402.

Guan, Benjamin X., Bir Bhanu, Ninad S Thakoor, Prue Talbot, Sabrina Lin (2013) Automatic cell region detection by k-means with weighted entropy.10th International Symposium Biomedical Imaging (ISBI), IEEE on pp. 418-421.

Guan, B.X., Bhanu, B., Talbot, P., and Lin, S. (2012)Automated Human Embryonic Stem Cell Detection. 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), pp 75-82.

Guan, Benjamin X., Bir Bhanu, Prudence Talbot, and Sabrina Lin (2012) Detection of non-dynamic blebbing single unattached Human Embryonic Stem Cells. 19th IEEE International Conference on Image Processing (ICIP). pp 2293-2296.

Guan, Benjamin, Bir Bhanu, Ninad Thakoor, Prudence Talbot, and Sabrina Lin (2011) Human Embryonic Stem Cell Detection by Spatial Information and Mixture of Gaussians, IEEE 1st International Conference on Healthcare Informatics, Imaging and Systems Biology. hisb, pp.307-314.

Lin, S., S Fonteno, S Satish, B Bhanu, P Talbot (2010) Video bioinformatics analysis of human embryonic stem cell colony growth. Journal of Visualized Experiments. 39 May 20 doi:  10.3791/1933:

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